IgDAWG/BIGDAWG: Case-Control Analysis of Multi-Allelic Loci
Version 2.0.2

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) . Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) .

Getting started

Package details

AuthorDerek Pappas <[email protected]>, Steve Mack <[email protected]>, Jill Hollenbach <[email protected]>
MaintainerSteve Mack <[email protected]>
LicenseGPL (>= 3)
URL http://tools.immunogenomics.org/ https://github.com/IgDAWG/BIGDAWG
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
IgDAWG/BIGDAWG documentation built on Dec. 4, 2017, 1:58 p.m.