summaryQC: Method summaryQC

In InesdeSantiago/align_parser: BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

Description

Method summaryQC

Generates summary of QC result.

Usage

summaryQC(.Object)

## S4 method for signature 'BaalChIP'
summaryQC(.Object)

Arguments

.Object

An object of the BaalChIP class.

Value

A list with two elements:

• filtering_stats containing the number of variants that were filtered out in each filter category and the total number that 'pass' all filters.

• average_stats containing the average number and average percentage of variants in each filter category, averaged across all analysed groups.

Author(s)

Ines de Santiago

See Also

BaalChIP.run, plotQC

Examples

data('BaalObject')
summaryQC(BaalObject)

InesdeSantiago/align_parser documentation built on March 21, 2019, 12:06 a.m.