Man pages for InternationalRiceResearchInstitute/pedX
| calcEqCg | The number of equivalent complete generations for several... |
| calcNei | calculate Nei |
| cnGMS | Setting the connection |
| F1inbred | F1inbred Function to identify the inbreedign coefficent of... |
| fancyPCA | fancyPCA function for plotting interactive PCA |
| get1Gen | get1Gen Function for getting one generation of a pedigree |
| getallGen | getallGen function for getting all generations of a pedigree |
| getallGids | get1Gen Function for getting all gids associated with a name |
| getallNames | get1Gen Function for getting all gids associated with a name |
| getCOP | getCOP Function for getting a sparse relationship (COP)... |
| getCOPgalaxy | Get pedigree relationship matrix |
| getF1 | getF1 function to get gid of the nearest f1 cross |
| getMgid | getMgid Function for getting the last gid resulting from a... |
| getPrnts | getPrnts Function to get parents of an individaul |
| gidMax | gidMax Function to identify the most commonly used gid |
| inDatabase | inDatabase Function to check if something is in the database |
| kinNe | kinNe Function for calculating Ne using a kinship matrix |
| Mode | Mode Function for finding the most frequent value in a vector |
| plotPCA | plotPCA function for making a two-paneled pca plot |
| sampleSelect | Sample selection function for selecting representative... |
| tracePedg1 | tracePedg1 function for tracing one generation of a pedigree |
