API for IsamBenS/ClusteringTool
Clustering Tool

Global functions
ClusteringTool.run Man page Source code
FPH.annotate.clusters.to.fcs Source code
FPH.compute.F.G.matrix Source code
FPH.get.dim.names Source code
FPH.get.file.clusters Source code
FPH.get.file.name Source code
FPH.get.labels.from.mapping.file Source code
FPH.get.prec.rec.matrices Source code
FPH.get.purity.matrix Source code
FPH.link.labels.to.populations Source code
FPH.load.folder Source code
FPH.map.test.to.ref Source code
FPH.retrieve.clusters.data.from.file Source code
FPH.retrieve.scores.data.from.file Source code
add.keyword.to.fcs Source code
benchmark.method Source code
benchmark.source.method Source code
calculate.F.beta.coef Source code
calculate.FG.fiability.coef Source code
calculate.G.coef Source code
calculate.efficiency.coef Source code
calculate.false.positive.rate Source code
calculate.parameter.influence.factor Source code
calculate.precision.recall.for.clust Source code
calculate.speed.factor Source code
calculate.true.positive.rate Source code
compute.purity.points Source code
draw.F.score.barplot Source code
draw.cumulated.filled.plots Source code
enrich.FCS Source code
get.IDs.identical.main.param Source code
get.IDs.identical.sub.params Source code
get.available.ram Source code
get.keywords.with.keypart.FCS Source code
get.nmb.cores.max Source code
get.ordered.table.from.runs Source code
get.params.list Source code
is.defined Source code
keyword.exists.FCS Source code
m.compensate Source code
m.inv.compensate Source code
m.inv.transform.asinh Source code
m.inv.transform.logicle Source code
m.transform.asinh Source code
m.transform.logicle Source code
modify.keyword.value Source code
order.table.by.main.param Source code
order.table.by.sub.params Source code
plot.purity.by.annot Source code
plot.selected.clusters Source code
run.algo.combi Source code
run.algo.param.combi Source code
write.FCS.CIPHE Source code
IsamBenS/ClusteringTool documentation built on Nov. 25, 2018, 2:09 p.m.