Example.GeneScan3D.UKB.GLMM: Data example for GeneScan3D UKBB gene-based testing based on...

In Iuliana-Ionita-Laza/BIGKnock: BIobank-scale Gene-based association test via Knockoffs

Data example for GeneScan3D UKBB gene-based testing based on GLMM.

Description

This example dataset contains a fitted null GLMM results, variance ratio and sparse Sigma matrix, which are obtained by SAIGE/SAIGE-Gene package. Besides, it also contains the original and knockoff genotype for gene and buffer region and enhancer, as well as the positions of gene buffer region.

Usage

data("GeneScan3D.UKB.GLMM.example")

Format

An object of class list of length 8.

Examples

data("GeneScan3D.UKB.GLMM.example")

result.null.model.GLMM=GeneScan3D.UKB.GLMM.example$result.null.model.GLMM
ratio=GeneScan3D.UKB.GLMM.example$ratio
sparseSigma=GeneScan3D.UKB.GLMM.example$sparseSigma
G_gene_buffer=GeneScan3D.UKB.GLMM.example$G_gene_buffer
pos_gene_buffer=GeneScan3D.UKB.GLMM.example$pos_gene_buffer
G_gene_buffer_knockoff1=GeneScan3D.UKB.GLMM.example$G_gene_buffer_knockoff1
G_enhancer=GeneScan3D.UKB.GLMM.example$G_enhancer
G_enhancer_knockoff1=GeneScan3D.UKB.GLMM.example$G_enhancer_knockoff1
Gsub.id=result.null.model.GLMM$sampleID

Iuliana-Ionita-Laza/BIGKnock documentation built on July 31, 2023, 3:50 p.m.