Files in JCSzamosi/aftersl1p
Generate Summary Graphics and Basic Analysis of 16s Data
.Rbuildignore
.gitignore
AfterSl1p.Rproj
CHANGELOG.md
DESCRIPTION
NAMESPACE
NAMESPACE-old
R/AfterSl1p-package.R
R/data.R
R/long_distance_df.R
R/make_phy_df.R
R/plot_alpha.R
R/plot_rank_ab.R
R/plot_read_depth.R
R/plot_tax_bar.R
R/plt_ord.R
R/prep_plot_rank_ab.R
R/prep_plt_ord.R
R/prop_tax_down.R
R/utils.R
README.Rmd
README.md
benchmark/data.RData
benchmark/expectations/bad_plt.pdf
benchmark/expectations/bot_plt.pdf
benchmark/expectations/class_plt.pdf
benchmark/expectations/fam_plt.pdf
benchmark/expectations/gen_plt.pdf
benchmark/expectations/king_plt.pdf
benchmark/expectations/left_plt.pdf
benchmark/expectations/ltz_plt.pdf
benchmark/expectations/mn_dn_frgt_plt.pdf
benchmark/expectations/mn_dn_plt.pdf
benchmark/expectations/mn_frgt_plt.pdf
benchmark/expectations/mn_plt.pdf
benchmark/expectations/nm_gd_plt.pdf
benchmark/expectations/nmbd_col_plt.pdf
benchmark/expectations/none_plt.pdf
benchmark/expectations/null_plt.pdf
benchmark/expectations/ord_plt.pdf
benchmark/expectations/phy_plt.pdf
benchmark/expectations/right_plt.pdf
benchmark/expectations/rot_plt.pdf
benchmark/expectations/sml_plt.pdf
benchmark/expectations/spec_plt.pdf
benchmark/expectations/test_plot_read_depth.html
benchmark/expectations/test_plot_tax_bar.html
benchmark/expectations/too_big_plt.pdf
benchmark/expectations/top_plt.pdf
benchmark/expectations/un_col_plt.pdf
benchmark/expectations/unbd_col_plt.pdf
benchmark/expectations/zero_plt.pdf
benchmark/test_plot_read_depth.Rmd
benchmark/test_plot_tax_bar.Rmd
data/acols_60.rda
data/cols_21.rda
data/cols_31.rda
data/cols_60.rda
data/cols_70.rda
inst/CITATION
man/AfterSl1p-package.Rd
man/axis_num.Rd
man/dbig_genera.Rd
man/df_glom.Rd
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/lddf_check.Rd
man/lddf_work.Rd
man/long_distance_df.Rd
man/make_ord_df.Rd
man/make_pcoa_df.Rd
man/make_phy_df.Rd
man/make_rda_df.Rd
man/order_levs.Rd
man/order_taxa.Rd
man/plot_alpha.Rd
man/plot_rank_ab.Rd
man/plot_read_depth.Rd
man/plot_tax_bar.Rd
man/plt_ord.Rd
man/prd_check.Rd
man/prd_clrs.Rd
man/prop_tax_down.Rd
man/prop_tax_row.Rd
man/prop_tax_tab.Rd
man/rank_abund.Rd
man/remain.Rd
man/rotate_ticks.Rd
man/subset_order.Rd
man/tax_colours.Rd
tests/testthat.R
tests/testthat/dbig_genera/otumat.csv
tests/testthat/dbig_genera/samdat.csv
tests/testthat/dbig_genera/taxmat_ambig.csv
tests/testthat/dbig_genera/taxmat_dbig.csv
tests/testthat/dbig_genera/taxmat_unique.csv
tests/testthat/long_distance_df/lddf_base_1col.csv
tests/testthat/long_distance_df/lddf_base_2col_1bsamp.csv
tests/testthat/long_distance_df/lddf_nobase.csv
tests/testthat/long_distance_df/otumat.csv
tests/testthat/long_distance_df/samdat.csv
tests/testthat/long_distance_df/taxmat_ambig.csv
tests/testthat/make_phy_df/otumat.csv
tests/testthat/make_phy_df/otumat_rel.csv
tests/testthat/make_phy_df/phy_df_otu_out.csv
tests/testthat/make_phy_df/phy_df_out.csv
tests/testthat/make_phy_df/samdat.csv
tests/testthat/make_phy_df/taxmat.csv
tests/testthat/make_phy_df/taxmat_ambig.csv
tests/testthat/make_phy_df/test_out.csv
tests/testthat/order_taxa/otumat_rel.csv
tests/testthat/plot_read_depth/dat.RData
tests/testthat/plot_tax_bar/dats.RData
tests/testthat/prep_plt_ord/aitch_df.csv
tests/testthat/prep_plt_ord/bray_df.csv
tests/testthat/prep_plt_ord/dat_aitch.RData
tests/testthat/prep_plt_ord/dat_ord.RData
tests/testthat/prep_plt_ord/dat_rel_filt.RData
tests/testthat/prep_plt_ord/jacc_df.csv
tests/testthat/prop_tax_down/otumat.csv
tests/testthat/prop_tax_down/samdat.csv
tests/testthat/prop_tax_down/taxmat_ambig.csv
tests/testthat/prop_tax_down/taxmat_ambig_propped_dbig.csv
tests/testthat/prop_tax_down/taxmat_ambig_propped_nodbig.csv
tests/testthat/prop_tax_down/taxmat_unique.csv
tests/testthat/prop_tax_down/taxmat_unique_propped.csv
tests/testthat/test-long_distance_df.R
tests/testthat/test-make_phy_df.R
tests/testthat/test-plot_rank_ab.R
tests/testthat/test-plot_read_depth.R
tests/testthat/test-plot_tax_bar.R
tests/testthat/test-plt_ord.R
tests/testthat/test-prep_plot_rank_ab.R
tests/testthat/test-prep_plt_ord.R
tests/testthat/test-prop_tax_down.R
