Man pages for JCSzamosi/aftersl1p
Generate Summary Graphics and Basic Analysis of 16s Data
| AfterSl1p-package | AfterSl1p: Generate Summary Graphics and Basic Analysis of... |
| axis_num | Get the axis number Take a character vector of the form... |
| dbig_genera | Disambiguate taxa |
| df_glom | Like tax_glom, but for data frames |
| lddf_check | Check the inputs of 'long_distance_df()' |
| lddf_work | Does the actual gathering and spreading without testing... |
| long_distance_df | Create a long data frame of among-sample distances |
| make_ord_df | Make a data frame of the ordination |
| make_pcoa_df | Make a data frame of the ordination if the ordination method... |
| make_phy_df | Generate a Data Frame for Taxon Bar Charts |
| make_rda_df | Make a data frame of the ordination if the ordination method... |
| order_levs | Order the levels of one factor by the values of another |
| order_taxa | Order Taxon Name Factors |
| plot_alpha | Plot alpha diversity |
| plot_rank_ab | Create a rank-abundance plot from a phyloseq data frame |
| plot_read_depth | View read depth |
| plot_tax_bar | Create a Taxa Bar Chart |
| plt_ord | Plot the ordination |
| prd_check | Check inputs for plot_read_depth() |
| prd_clrs | Deal w colour vector for plot_read_depth() |
| prop_tax_down | Propagate taxon information down an entire 'tax_table' in a... |
| prop_tax_row | Propagate taxon information in a single row of a 'tax_table'... |
| prop_tax_tab | Propagate taxon information down an entire 'tax_table' object |
| rank_abund | Rank Taxa by Abundance |
| remain | Calculate the difference between included taxa and 100% for... |
| rotate_ticks | Rotate the x tick labels 90 degrees and position them... |
| subset_order | Subset and generate taxon ordering |
| tax_colours | taxon colour vector |
