JCVenterInstitute/GGRaSP: Gaussian-Based Genome Representative Selector with Prioritization

Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Getting started

Package details

Maintainer
LicenseGPL-2
Version1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("JCVenterInstitute/GGRaSP")
JCVenterInstitute/GGRaSP documentation built on June 15, 2018, 8:14 a.m.