R/data.R

In JEFworks-Lab/STdeconvolve: Reference-free Cell-Type Deconvolution of Multi-Cellular Spatially Resolved Transcriptomics Data

#' Spatial transcriptomics of the mouse olfactory bulb
#'
#' @format List where 'counts' is a sparse matrix with columns as voxels and rows as genes and
#'                    'pos' is a data frame of x and y position values per voxel
#'
#' @source \url{https://science.sciencemag.org/content/353/6294/78}
#' 
#' @usage data(mOB)
"mOB"

# MERFISH data of the mouse pre-optic region for a female naive animal (FN7)
#
# @format List where 'mat' is a sparse matrix with columns as cells and rows as genes
#                          where expression values have already been normalized by volume
#                    'pos' is a data frame of x, y, z position values per cell
#                          and brain position as 6 slice indices from anterior to posterior
#
# @source \url{https://science.sciencemag.org/content/362/6416/eaau5324/}
# "mPOA"

#' Spatial transcriptomics of 4 breast cancer biopsy sections
#'
#' @format List where 'counts' is a sparse matrix with columns as voxels and rows as genes and
#'                    'pos' is a data frame of x and y position values per voxel
#'                          and slice index for 4 consecutive slices
#'
#' @source \url{https://science.sciencemag.org/content/353/6294/78}
#' 
#' @usage data(BCL)
# "BCL"