docs/index.md
In JEFworks/MUDAN: Multi-sample Unified Discriminant ANalysis
MUDAN
Multi-sample Unified Discriminant ANalysis
(Fun fact: mudan 牡丹 means peony in Chinese)
Motivation
To analyze multiple single-cell RNA-seq samples in a coherent manner in order to acheive joint annotation of cell types across patients, time-points, and batches.
Benefits and Capabilities
Enhanced visualizations
- Detected clusters are artificially separated for visualization purposes only
Fast subpopulation detection and characterization
- Graph-based community detection to identify subpopulations
- Stability analysis to ensure transcriptionally distinct subpopulations
- Differential gene expression and marker selection functionalities
Multi-sample clustering
- Preserves variation observed in each sample
- Ideal for when samples may differ in cell type composition
Install
require(devtools)
devtools::install_github("JEFworks/MUDAN")
Tutorials
Coming soon!
JEFworks/MUDAN documentation built on June 19, 2021, 6:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
MUDAN
Multi-sample Unified Discriminant ANalysis
(Fun fact: mudan 牡丹 means peony in Chinese)
Motivation
To analyze multiple single-cell RNA-seq samples in a coherent manner in order to acheive joint annotation of cell types across patients, time-points, and batches.
Benefits and Capabilities
Enhanced visualizations
- Detected clusters are artificially separated for visualization purposes only
Fast subpopulation detection and characterization
- Graph-based community detection to identify subpopulations
- Stability analysis to ensure transcriptionally distinct subpopulations
- Differential gene expression and marker selection functionalities
 
Multi-sample clustering
- Preserves variation observed in each sample
- Ideal for when samples may differ in cell type composition
Install
require(devtools)
devtools::install_github("JEFworks/MUDAN")
Tutorials
Coming soon!
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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