README.md

In JGWojtyniak/ospsreports: ospsreports Bookdown Workflow

ospsreports

R Bookdown Workflow for reporting PBPK Models via PKSim and MoBi

Current state: Early development only

Install via devtools::install_github("JGWojtyniak/ospsreports")

Prerequisites

A running R and R Markdown for LaTeX enviroment is required. For further information see: https://bookdown.org/yihui/rmarkdown/installation.html.

Features

This package sets up a drake controlled analysis plan for the generation of a PBPK report for models created via PKSim and MoBi. The produced LaTeX report is generated by bookdown and hence, combines the best features of rmarkdown, LaTeX and KOMA-Script. Features currently supported by the template are: - A title page - Table of contents / figures / tables / equations / acronyms / symbols - Equations - Cross-Referencing - Advanced tables via LaTeX and kableExtra - Inidividual bibliography styles

Getting started

After installation of the package create a RStudio project in a new directory for your report. Following, load the package (library(ospsreports)) and run the copy_drakeospsreports_files() function to copy the template structure in your project directory. Open the _drake.R script in your project directory an run the script. The supplement is created and stored in _book folder.

JGWojtyniak/ospsreports documentation built on Nov. 14, 2019, 12:11 p.m.