panelDataSIR_Gillespie: Possible states and their respective logical representations....
In JMacDonaldPhD/Epidemics: Inference For Epidemics (one line, title case)
View source: R/simplified_gillespies.R
Description
Possible states and their respective
logical representations.
Summarise in matrix
Initial state of each individual
Initial state of epidemic at population level
Possible Events
Summarise in a matrix
Panel Data
Waiting Time
Panel Data
Convert individualStates into panelData
currentState = sapply(X = 1:N, function(X) which(individualStates[X,]))
Which event happens?
To who?
Update Population State
Update Individual State
Convert individualStates into panelData
Usage
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panelDataSIR_Gillespie(
initialState,
beta,
gamma,
obsTimes,
kernel,
replace = F
)
JMacDonaldPhD/Epidemics documentation built on Jan. 10, 2020, 2:48 a.m.
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View source: R/simplified_gillespies.R
Description
Possible states and their respective logical representations. Summarise in matrix Initial state of each individual Initial state of epidemic at population level Possible Events Summarise in a matrix Panel Data Waiting Time Panel Data Convert individualStates into panelData currentState = sapply(X = 1:N, function(X) which(individualStates[X,])) Which event happens? To who? Update Population State Update Individual State Convert individualStates into panelData
Usage
1 2 3 4 5 6 7 8 | panelDataSIR_Gillespie(
initialState,
beta,
gamma,
obsTimes,
kernel,
replace = F
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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