Files in JSB-UCLA/scDED
Single-cell Dubious Embedding Detector
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/scDEED.R
README.md
data/input_counts.rda
data/tsne_table.rda
data/tutorial_tSNE.Rds
data/tutorial_timeelapsed.Rds
data/tutorial_umap.Rds
data/umap_m_table.rda
data/umap_n_table.rda
data/umap_nm_table.rda
man/Cell.Classify.Rd
man/Cell.Similarity.Rd
man/Distances.UMAP.Rd
man/Distances.pre_embedding.Rd
man/Distances.tSNE.Rd
man/Permuted.Rd
man/figures/10000_cell_pca.png
man/figures/10000_tsne_optimized.png
man/figures/10000_tsne_original.png
man/figures/10000_umap_optimized.png
man/figures/10000_umap_original.png
man/figures/ElbowPlot.png
man/figures/ifnb_clusters.png
man/figures/nm_vs_dub.png
man/figures/tsne_200.png
man/figures/tsne_50.png
man/figures/tsne_original.png
man/figures/tsne_per_dub.png
man/figures/umap_opt.png
man/input_counts.Rd
man/optimize.Rd
man/scDEED.Rd
