input_counts: input data sampled from Hydra data

In JSB-UCLA/scDED: Single-cell Dubious Embedding Detector

input data sampled from Hydra data

Description

This is an example input data which is generated by randomly sampling 10000 cells from Hydra data.

Usage

data("input_counts")

Format

The format is: Formal class 'dgCMatrix' [package "Matrix"] with 6 slots ..@ i : int [1:22443960] 51 62 83 112 122 124 129 130 159 161 ... ..@ p : int [1:10001] 0 1100 4553 8336 12371 13377 13903 19122 23878 28668 ... ..@ Dim : int [1:2] 33391 10000 ..@ Dimnames:List of 2 .. ..$ : chr [1:33391] "t33417aep-AAPT1-ARATH" "t33418aep-ZBED8-BOVIN" "t37645aep-CP4V2-MOUSE" "t31628aep-TSP1-BOVIN" ... .. ..$ : chr [1:10000] "02-P1_GTCAGCGCTGTG" "02-P1_TGAGAGTGAGCC" "06-FM_GCCGTACAGCAT" "11-BU_CGTCTACATATA" ... ..@ x : num [1:22443960] 1 1 1 1 2 1 1 1 2 10 ... ..@ factors : list()

Details

The Hydra scRNA-seq dataset contains an extensive molecular description of the adult Hydra polyp

Source

https://www.dropbox.com/sh/fwx553vie2eck5v/AACZEjWEvpag-wvx9MWhblzXa?dl=0

References

In the file Hydra_Seurat_Whole_Transcriptome.rds from the link above

Examples

data(input_counts)
## maybe str(input_counts) ; plot(input_counts) ...

JSB-UCLA/scDED documentation built on Feb. 8, 2025, 11:12 a.m.