bed2df: Return a dataframe object with RNA location information

In JackXu2333/rseAnalysis: Correlation analysis of RNA secondary structure mutation and differential expression

Description

Perform bed file retrieving using result stored in standardized list for easy usage.

Usage

bed2df(filepath)

Arguments

filepath

The path directed to bed file on current working directory

Value

Return a data.frame object contain bed document loaded

• CHROM - Located in chromosome CHROM

• STAPOS - The start location of the sequence

• ENDPOS - The end location of the sequence

• DIR - The direction of the sequence

• TYPE - The type of the sequence

• ID - ID of the RNA (if avilable)

• ALIAS - The alias of the sequence

• NAME - The name of the sequence

Author(s)

Sijie Xu, [e-mail]

Examples

filePath <- system.file("extdata", "test.bed", package = "rseAnalysis")
bed <- bed2df(filePath)

JackXu2333/rseAnalysis documentation built on Dec. 31, 2020, 1:10 p.m.