make_inputs: Build inputs for CCSRA

View source: R/make_inputs.R

make_inputsR Documentation

Build inputs for CCSRA

Description

make_inputs builds inputs necessary for running CCSRA

Usage

make_inputs(
  Version = "CCSRA_v9",
  Method,
  M_prior,
  h_prior,
  D_prior,
  SigmaR_prior,
  Sslope_prior = c(-999, 999, 1),
  AgeComp_at,
  Index_t,
  Cw_t,
  W_a,
  Mat_a,
  RecDev_biasadj,
  F_method,
  rec_method = "dev",
  estimate_recdevs = TRUE,
  composition_likelihood = 0
)

Arguments

composition_likelihood

Integer specifying the likelihood for compositional data, from the available options below:

composition_likelihood=0

Multinomial

composition_likelihood=1

Dirichlet-multinomial using linear parameterization

composition_likelihood=2

Multivariate-Tweedie using fixed power parameter p = 1.2

composition_likelihood=3

Multivariate-Tweedie estimating both parameters phi and p

Value

a list with inputs for building CCSRA TMB object


James-Thorson/CCSRA documentation built on Aug. 28, 2023, 7:51 a.m.