plot_encounter_diagnostic: Check predicted encounter probability against observed...

In James-Thorson/FishStatsUtils: Utilities (shared code and data) for FishStats spatio-temporal modeling toolbox

Check predicted encounter probability against observed encounter frequency

Description

plot_encounter_diagnostic is a diagnostic function for checking validity of the encounter-probability component of a spatio-temporal model

Usage

plot_encounter_diagnostic(
  Report,
  Data_Geostat,
  cutpoints_z = seq(0, 1, length = 21),
  interval_width = 1.96,
  DirName = paste0(getwd(), "/"),
  PlotName = "Diag--Encounter_prob.png",
  ...
)

Arguments

Report	tagged list of outputs from TMB model via Obj$report()
interval_width	width for confidence intervals
DirName	Directory for saving plot and table
PlotName	Name for plot
...	arguments passed to par

Value

Return Tagged list of output

Diag_i

Diagnostic output for each sample i

Diag_z

Diagnostic output for each bin z

James-Thorson/FishStatsUtils documentation built on July 21, 2024, 2:17 a.m.