SpatialDFA is an R package for implementing spatial dynamic factor analysis, a model for estimating spatiotemporal density dependence in community dynamics.
This function depends on R version >=3.1.1 and a variety of other tools.
First, install the "devtools" package from CRAN
# Install and load devtools package
install.packages("devtools")
library("devtools")
Second, please install the following: TMB (Template Model Builder): https://github.com/kaskr/adcomp INLA (integrated nested Laplace approximations): http://www.r-inla.org/download
Note: at the moment, TMB and INLA can be installed using these commands:
# devtools command to get TMB from GitHub
install_github("kaskr/adcomp/TMB")
# source script to get INLA from the web
source("http://www.math.ntnu.no/inla/givemeINLA.R")
Next, please install the SpatialDFA from this GitHub repository using a function in the "devtools" package:
# Install package
install_github("james-thorson/spatial_DFA")
# Load package
library(spatial_DFA)
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