First, please install JAGS (Just Another Gibbs Sampler) here: http://mcmc-jags.sourceforge.net/
Next, please use R version >=3.1.1 and install the package:
# Install package install.packages("devtools") library("devtools") install_github("James-Thorson/spatial_condition_factor") # Load package library(SpatialDeltaGLMM)
Please see examples folder for an example of how to run the model: https://github.com/James-Thorson/spatial_condition_factor/blob/master/examples/example_for_NWFSC_shelf-slope_data.R
For more details regarding development and testing of this delta-GLMM software please see: Thorson, J. T., A. O. Shelton, E. J. Ward, and H. Skaug. In press. Geostatistical delta-generalized linear mixed models improve precision for estimated abundance indices for West Coast groundfishes. ICES Journal of Marine Science. Thorson, J. T., H. Skaug, K. Kristensen, A. O. Shelton, E. J. Ward, J. Harms, and J. Benante. In press. The importance of spatial models for estimating the strength of density dependence. Ecology.
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