DeconCollection-class: Class "DeconCollection"

In JasonHackney/GSDecon: Deconvolution of cellular proportions in expression data

Class “DeconCollection”

Description

This class is used for instantiation and manipulation of gene sets used for deconvolution-based analyses. These include immune cell types and normal expression from 35 different human tissues.

Value

An object of class DeconCollection, initialized with the appropriate type.

Objects from the Class

Objects should be created using DeconCollection.

Slots

type:

Holds an object of class ScalarCharacter containing the string describing the collection type. In this case, Decon.

ids:

Nothing is currently done with any IDs stored here. Saved for future use.

Author(s)

J.A. Hackney

Examples

  dc <- DeconCollection()
  deconGSC <- GeneSetCollection(idType=EntrezIdentifier(), setType=dc)

JasonHackney/GSDecon documentation built on Aug. 6, 2022, 8:36 a.m.