pathwayDB: pathwayDB
In Jasondd66/covid_19bioMarkers: Performs common bioinformatics analyses
Description
Usage
Format
References
Examples
Description
Various pathway datasets (BioCarta, KEGG, Reactome, WikiPathways) download from Enrichr and converted to tidy data format.
Usage
1
Format
An object of class "data.frame";
- Pathways
Name of pathway/geneset
- Genes
Gene symbol
- DB
Name of database/annotation
References
Chen EY et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14).
(Data preprocessing)
Examples
1
2
Jasondd66/covid_19bioMarkers documentation built on Dec. 18, 2021, 12:33 a.m.
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Description Usage Format References Examples
Description
Various pathway datasets (BioCarta, KEGG, Reactome, WikiPathways) download from Enrichr and converted to tidy data format.
Usage
1 |
Format
An object of class "data.frame";
- Pathways
Name of pathway/geneset
- Genes
Gene symbol
- DB
Name of database/annotation
References
Chen EY et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14). (Data preprocessing)
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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