Files in JayAchar/hisreportr

hisreportr: Automating MSF OCA EMR reporting

NEWS.md R/access_postgresql.R R/calculate_reporting_period.R R/clean_adm_demographics.R R/clean_cd4_vl.R R/clean_hiv_status.R R/create_rmd_table.R R/drug_tx_by_visit.R R/filter_year_month.R R/hcv_utils.R R/hisreportr.R R/merge_to_episode.R R/msf_theme.R R/outcome_by_followup_time.R R/prepare_hcv_report_data.R R/prepare_hiv_report_data.R R/prepare_tb_report_data.R R/recalculate_age_tx_start.R R/render_report.R R/time_cohort_outcomes.R R/utils.R README.Rmd README.md data-raw/internal_data.R data-raw/testdata-calculate_reporting_period.R data-raw/testdata-clean_adm_demographics.R data-raw/testdata-drug_tx_by_visit.R data-raw/testdata-filter_year_month.R data-raw/testdata-hcv_monthly_report.R data-raw/testdata-hiv_monthly_report.R data-raw/testdata-hiv_outcome_table.R data-raw/testdata-merge_hcv_genotype.R data-raw/testdata-merge_to_episode.R data-raw/testdata-outcome_by_followup_time.R data-raw/testdata-prepare_hcv_report_data.R data-raw/testdata-recalculate_age_tx_start.R data-raw/testdata-tb_monthly_report.R data-raw/testdata-time_cohort_outcomes.R doc/package-dev.R doc/package-dev.Rmd inst/rmarkdown/fragments/annual_hiv_1y_outcome.Rmd inst/rmarkdown/fragments/drug_tx_table.Rmd inst/rmarkdown/fragments/historical_period_outcomes_plot.Rmd inst/rmarkdown/fragments/hiv_fu_outcomes_def.Rmd inst/rmarkdown/fragments/monthly_initiation_plot.Rmd inst/rmarkdown/fragments/monthly_initiations.Rmd inst/rmarkdown/fragments/monthly_initiations_def.Rmd inst/rmarkdown/fragments/outcome_plot.Rmd inst/rmarkdown/fragments/quarterly_initiation_plot.Rmd inst/rmarkdown/fragments/regimen_initiation.Rmd inst/rmarkdown/fragments/regimen_initiation_defs.Rmd inst/rmarkdown/fragments/registration_characteristics.Rmd inst/rmarkdown/fragments/registration_characteristics_def.Rmd inst/rmarkdown/fragments/report_details.Rmd inst/rmarkdown/fragments/treatment_outcomes.Rmd inst/rmarkdown/fragments/treatment_outcomes_def.Rmd inst/rmarkdown/hcv_month.Rmd inst/rmarkdown/hiv_month.Rmd inst/rmarkdown/tb_month.Rmd inst/rmarkdown/templates/monthly_template/monthly/monthly_template.Rmd man/access_postgresql.Rd man/calculate_reporting_period.Rd man/clean_adm_demographics.Rd man/clean_cd4_vl.Rd man/clean_hiv_status.Rd man/create_rmd_table.Rd man/drug_tx_by_visit.Rd man/filter_year_month.Rd man/hisreportr.Rd man/int_breaks_rounded.Rd man/merge_hcv_genotype.Rd man/merge_to_episode.Rd man/msf_theme.Rd man/outcome_by_followup_time.Rd man/postgres_present.Rd man/prepare_hcv_report_data.Rd man/prepare_hiv_report_data.Rd man/prepare_tb_report_data.Rd man/recalculate_age_tx_start.Rd man/render_report.Rd man/time_cohort_outcomes.Rd man/write_to_postgres_tester.Rd tests/testthat.R tests/testthat/test-calculate_reporting_period.R tests/testthat/test-clean_adm_demographics.R tests/testthat/test-clean_hiv_status.R tests/testthat/test-create_rmd_table.R tests/testthat/test-drug_tx_by_visit.R tests/testthat/test-filter_year_month.R tests/testthat/test-merge_hcv_genotype.R tests/testthat/test-merge_to_episode.R tests/testthat/test-outcome_by_followup_time.R tests/testthat/test-prepare_hcv_report_data.R tests/testthat/test-recalculate_age_tx_start.R tests/testthat/test-render_report.R tests/testthat/test-sql_db.R tests/testthat/test-time_cohort_outcomes.R vignettes/package-dev.Rmd