fitmodels: Fit data and a list of Mk models with simmap Makes a list of...
In JeffWeinell/misc.wrappers: Miscellaneous Wrapper Functions for Spatial Population Genomics
fitmodels R Documentation
Fit data and a list of Mk models with simmap
Makes a list of all possible model schemes for transitions between a set of states.
Description
Fit data and a list of Mk models with simmap
Makes a list of all possible model schemes for transitions between a set of states.
Usage
fitmodels(tree, priors.tips, model.transitions, priors.root = NULL)
Arguments
tree
newick character string with phylogenetic tree
priors.tips
matrix with character state priors for the tips of the tree
model.transitions
a square matrix or list of square matrices for the transition rate parameter schemes; a list with all possible parameter schemes can be generated with the function transitionModels
priors.root
a numeric vector with the priors for the character states at the root node. Default is a uniform distribution.
Value
A list of transition matrices, for all possible partitions of pairwise transitions into parameters describing transitions.
JeffWeinell/misc.wrappers documentation built on Sept. 20, 2023, 12:42 p.m.
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| fitmodels | R Documentation |
Fit data and a list of Mk models with simmap Makes a list of all possible model schemes for transitions between a set of states.
Description
Fit data and a list of Mk models with simmap
Makes a list of all possible model schemes for transitions between a set of states.
Usage
fitmodels(tree, priors.tips, model.transitions, priors.root = NULL)
Arguments
tree |
newick character string with phylogenetic tree |
priors.tips |
matrix with character state priors for the tips of the tree |
model.transitions |
a square matrix or list of square matrices for the transition rate parameter schemes; a list with all possible parameter schemes can be generated with the function transitionModels |
priors.root |
a numeric vector with the priors for the character states at the root node. Default is a uniform distribution. |
Value
A list of transition matrices, for all possible partitions of pairwise transitions into parameters describing transitions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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