mvBM.getRate: Lineage-specific rate estimation using multiple variance...
In JeroenSmaers/evomap: Evomap
Description
Usage
Arguments
Value
References
Examples
Description
Computes lineage-specific rates using mvBM
Usage
1
mvBM.getRate(tree, tree_mvBM, branches, sigma2Distr)
Arguments
tree
an object of class "phylo".
tree_mvBM
an object of class "phylo". The rescaled tree from an mvBM procedure.
branches
vector listing the branch numbers ('edge' numbers) for which the mvBM rate should be computed
sigma2Distr
the MCMC distribution of sigma2 from an MCMC mvBM procedure
Value
mvBM rate estimate
References
Smaers, Mongle & Kandler (2016) A multiple variance Brownian motion framework for estimating variable rates and inferring ancestral states. Biological Journal of the Linnean Society. 118 (1): 78-94.
Examples
1
see https://smaerslab.com/software/
JeroenSmaers/evomap documentation built on May 7, 2019, 10:35 a.m.
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Description Usage Arguments Value References Examples
Description
Computes lineage-specific rates using mvBM
Usage
1 | mvBM.getRate(tree, tree_mvBM, branches, sigma2Distr)
|
Arguments
tree |
an object of class "phylo". |
tree_mvBM |
an object of class "phylo". The rescaled tree from an mvBM procedure. |
branches |
vector listing the branch numbers ('edge' numbers) for which the mvBM rate should be computed |
sigma2Distr |
the MCMC distribution of sigma2 from an MCMC mvBM procedure |
Value
mvBM rate estimate
References
Smaers, Mongle & Kandler (2016) A multiple variance Brownian motion framework for estimating variable rates and inferring ancestral states. Biological Journal of the Linnean Society. 118 (1): 78-94.
Examples
1 | see https://smaerslab.com/software/
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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