readMSMCInference: Read in the final ouput of MSMC.
In JesseGarcia562/psmc2msprime:
Description
Usage
Arguments
Value
Examples
Description
Reads in the out.final.txt file from MSMC and converts the output into a tibble.
Usage
1
readMSMCInference(pathOfMSMCOutFinal, mutationRate)
Arguments
pathOfMSMCOutFinal
The path to the "out.final.txt" that MSMC outputs.
mutationRate
The mutation rate in mutations/bp/gen. This is the same mutation rate that one would use to scale results to real time and population sizes. See https://github.com/stschiff/msmc/blob/master/guide.md for more help.
Value
A tibble desribing the scaled population size changes over generations.
Examples
1
readMSMCInference(pathOfMSMCOutFinal = "../data/msprimeMultiHetSep/simulatedMsprime.oak.msmc.out.final.txt", mutationRate = 1e-8)
JesseGarcia562/psmc2msprime documentation built on May 29, 2019, 8:20 p.m.
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Description Usage Arguments Value Examples
Description
Reads in the out.final.txt file from MSMC and converts the output into a tibble.
Usage
1 | readMSMCInference(pathOfMSMCOutFinal, mutationRate)
|
Arguments
pathOfMSMCOutFinal |
The path to the "out.final.txt" that MSMC outputs. |
mutationRate |
The mutation rate in mutations/bp/gen. This is the same mutation rate that one would use to scale results to real time and population sizes. See https://github.com/stschiff/msmc/blob/master/guide.md for more help. |
Value
A tibble desribing the scaled population size changes over generations.
Examples
1 | readMSMCInference(pathOfMSMCOutFinal = "../data/msprimeMultiHetSep/simulatedMsprime.oak.msmc.out.final.txt", mutationRate = 1e-8)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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