Jfortin1/shinyMethylData: Example datasets of input data for shinyMethyl

The extracted data for the Illumina 450k methylation platform are from 369 TCGA Head and Neck Cancer samples from The Cancer Genome Atlas (TCGA). 310 samples are from tumor, 50 are matched normals and 9 are technical replicates of a control cell line. The extracted data for the Illumina EPIC methylation platform are from 3 technical replicates of the cell line GM12878 from the package minfiDataEPIC.

Getting started

Package details

Bioconductor views DNAMethylation
MaintainerJean-Philippe Fortin <[email protected]>
URL https://github.com/Jfortin1/shinyMethylData
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
Jfortin1/shinyMethylData documentation built on May 8, 2017, 11:28 p.m.