Files in Jialab-UCR/GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDC
DESCRIPTION
LICENSE
NAMESPACE
R/GDCRNATools-package.R
R/gdcCEAnalysis.R
R/gdcClinical.R
R/gdcCorPlot.R
R/gdcDEAnalysis.R
R/gdcDEGVisulization.R
R/gdcEnrichmentAnalysis.R
R/gdcEnrichmentPlots.R
R/gdcExportNetwork.R
R/gdcFilterSamples.R
R/gdcIDConversion.R
R/gdcKMPlot.R
R/gdcMatchSamples.R
R/gdcParseMetadata.R
R/gdcRNADownload.R
R/gdcRNAMerge.R
R/gdcShinyPlot.R
R/gdcSurvivalAnalysis.R
R/gdcVoomNormalization.R
R/sysdata.rda
README.md
data/DEGAll.rda
data/datalist
data/enrichOutput.rda
data/lncTarget.rda
data/mirCounts.rda
data/pcTarget.rda
data/rnaCounts.rda
inst/NEWS
man/DEGAll.Rd
man/GDCRNATools-package.Rd
man/enrichOutput.Rd
man/gdcBarPlot.Rd
man/gdcCEAnalysis.Rd
man/gdcClinicalDownload.Rd
man/gdcClinicalMerge.Rd
man/gdcCorPlot.Rd
man/gdcDEAnalysis.Rd
man/gdcDEReport.Rd
man/gdcEnrichAnalysis.Rd
man/gdcEnrichPlot.Rd
man/gdcExportNetwork.Rd
man/gdcFilterDuplicate.Rd
man/gdcFilterSampleType.Rd
man/gdcHeatmap.Rd
man/gdcKMPlot.Rd
man/gdcMatchSamples.Rd
man/gdcParseMetadata.Rd
man/gdcRNADownload.Rd
man/gdcRNAMerge.Rd
man/gdcSurvivalAnalysis.Rd
man/gdcVolcanoPlot.Rd
man/gdcVoomNormalization.Rd
man/lncTarget.Rd
man/mirCounts.Rd
man/pcTarget.Rd
man/rnaCounts.Rd
man/shinyCorPlot.Rd
man/shinyKMPlot.Rd
man/shinyPathview.Rd
tests/testthat.R
tests/testthat/test-gdcParseMetadata.R
vignettes/GDCRNATools.Rmd
vignettes/bibliography.bib
vignettes/figures/TCGA-CHOL.KMPlot.png
vignettes/figures/TCGA-CHOL.shinyCorPlot.gif
vignettes/figures/TCGA-CHOL.shinyKMPlot.gif
vignettes/figures/TCGA-CHOL.shinyPathview.gif
vignettes/figures/cor.png
vignettes/figures/gdcHeatmap.png
vignettes/figures/hyper.png
vignettes/figures/network.png
vignettes/index.Rmd
