This function is defunct. Use GenomicFeatures::extractTranscriptSeqs() instead.
Extract transcript sequences from a BSgenome object or an FaFile.
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A GRangesList object containing exons or cds grouped by transcript.
A BSgenome object or a FaFile from which the sequences will be taken.
getTranscriptSeqs is a wrapper for the
getSeq functions. The
purpose is to allow sequence extraction from either a
BSgenome or FaFile. Transcript
sequences are extracted based on the boundaries of the feature
provided in the
query (i.e., either exons or cds regions).
A DNAStringSet instance containing the sequences for all transcripts
predictCoding extractTranscriptSeqs getSeq
## See ?extractTranscriptSeqs in the GenomicFeatures package.
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