ExRANGES: ExRANGES Functions

In JigarDesai14/ExRANGES: Calculates ExRANGES values

Description

The following two functions are used to calcuate the RANGES values to be used to calculate ExRANGES.

Usage

calc.slopes(time.series, cycle=F, last.time.step)

sample.pval.calc(slopes, sample.size=10000)

Arguments

calc.slopes()

time.series - A matrix with rows as genes and columns as sample names. Samples must be labeled as XX_samplename, XX=Numeric number for time.

cycle - If data is cyclical then define the last time step form the last column to the first.

last.time.step - Time step from last column to the first column

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sample.pval.calc()

slopes - Output of calc.slopes(). Should be transposed pvalues of slopes between time points.

sample.size - How many time should the slopes be sampled for each gene to calculate a pvalue.

Examples

#sample.pval.calc(calc.slopes(time.series), sample.size=100)
#sample.pval.calc(calc.slopes(time.series, cycle=T, las.time.step=3), sample.size=100)

JigarDesai14/ExRANGES documentation built on May 7, 2019, 10:51 a.m.