JinmiaoChenLab/Rphenograph: R implementation of the phenograph algorithm

A simple R implementation of the phenograph [PhenoGraph](http:// www.cell.com/cell/abstract/S0092-8674(15)00637-6) algorithm, which is a clustering method designed for high-dimensional single-cell data analysis. It works by creating a graph ("network") representing phenotypic similarities between cells by calclating the Jaccard coefficient between nearest-neighbor sets, and then identifying communities using the well known ["Louvain method"] (https://sites.google.com/site/findcommunities/) in this graph.

Getting started

Package details

AuthorHao Chen
MaintainerHao Chen <[email protected]>
LicenseArtistic-2.0
Version0.99.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("JinmiaoChenLab/Rphenograph")
JinmiaoChenLab/Rphenograph documentation built on May 7, 2019, 10:52 a.m.