calculateEnrichment: Calculate Enrichment using EnrichR

Description Usage Arguments Value

View source: R/calculateEnrichment.R

Description

Calculate Enrichment using EnrichR

Usage

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calculateEnrichment(
  genes,
  enrichr_db,
  simplify = T,
  visualise = F,
  col = "#d2d2d2"
)

Arguments

genes

vector of HGNC gene identifiers

enrichr_db

Enrichr database to use, as in https://maayanlab.cloud/Enrichr/#stats

simplify

logical; perform simplifcation calculations/filtering on GOBP and Reactome?

visualise

logical; if T returns a ggplot object

col

fill colour of columns in ggplot

Value

Either a dataframe or ggplot visualisation of enriched terms


JoWatson2011/geneEnrichment documentation built on Nov. 13, 2021, 5:11 p.m.