runAnalysis-methods: runAnalysis
In Jon-Simpson/miRmapper: A package for the S4 miRmapper class

Description Usage Arguments Value Examples

This generic is for use on the miRmapper class to perform the the entire miRmapper analysis and export all outputs into a directory named 'miRmapper-Output' that is placed in the useres working directory.

runAnalysis(object)

## S4 method for signature 'miRmapper'
runAnalysis(object)

object

a 'miRmapper' object

5 output files into a directory named "miRmapper-Output". The files consist of a table indicating the total predicted gene targets for each miRNA and its percentage of impact, a table of the adjacency matrix that details the miRNA-target network, a bar plot of the the miRNA impact percentages, a dedrogram depicting miRNA clusters, and an identity heatmap depicting miRNA clustering.