extractSites: Extract CpG sites for gestational age prediction
In JonBohlin/GAprediction: Prediction of gestational age with Illumina HumanMethylation450 data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
The function allows the user to extract CpG sites used for gestational age prediction with the function predictGA.
Usage
1
extractSites(type="se")
Arguments
The argument type=c("se", "min", "all") can be used to specify which CpGs are to be extracted. "se" designates the CpGs needed by the predictGA function if the penalty term lambda is to be set to one standard error within the minimum, "min" specifies the minimum lambda, while "all" returns the complete sets of CpGs in the UL.mod.cv object.
type
- a string that can be "se" (default), "min" or "all", depending on which CpGs is wanted by the user.
Details
Use this function if predictGA fails due to missing predictor CpGs, or to see which CpGs are used by predictGA for gestational age prediction.
Value
Returns a vector with the requested CpG sites.
Author(s)
Jon Bohlin
See Also
Examples
1
CpGs <- extractSites( type="se" )
JonBohlin/GAprediction documentation built on May 8, 2019, 4:40 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
The function allows the user to extract CpG sites used for gestational age prediction with the function predictGA.
Usage
1 | extractSites(type="se")
|
Arguments
The argument type=c("se", "min", "all") can be used to specify which CpGs are to be extracted. "se" designates the CpGs needed by the predictGA function if the penalty term lambda is to be set to one standard error within the minimum, "min" specifies the minimum lambda, while "all" returns the complete sets of CpGs in the UL.mod.cv object.
type |
- a string that can be "se" (default), "min" or "all", depending on which CpGs is wanted by the user. |
Details
Use this function if predictGA fails due to missing predictor CpGs, or to see which CpGs are used by predictGA for gestational age prediction.
Value
Returns a vector with the requested CpG sites.
Author(s)
Jon Bohlin
See Also
Examples
1 | CpGs <- extractSites( type="se" )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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