MEM_values: MEM values

In JonathanIrish/MEMv3: Marker Enrichment Modeling (MEM)

Description

This list of 5 matrices is the output generated from MEM analysis of the PBMC dataset. It is meant to be used as input for the build.heatmaps function to generate population-specific MEM labels and clustered median and MEM score heatmaps.

Usage

data("MEM_values")

Format

The format is: List of 5 $ MAGpop :List of 1 ..$ : num [1:7, 1:25] 0.0254 0.0189 0.0207 2.5075 2.4995 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ MAGref :List of 1 ..$ : num [1:7, 1:25] 0.0146 0.0209 0.0206 0.0213 0.0235 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ IQRpop :List of 1 ..$ : num [1:7, 1:25] 0.5 0.5 0.5 0.68 0.655 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ IQRref :List of 1 ..$ : num [1:7, 1:25] 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ MEM_matrix:List of 1 ..$ : num [1:7, 1:25] 0.014421 -0.002766 0.000195 2.956736 2.981387 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ...

Examples

data(MEM_values)
## maybe str(MEM_values) ; plot(MEM_values) ...

JonathanIrish/MEMv3 documentation built on July 14, 2019, 10:43 p.m.