Files in JosephCrispell/homoplasyFinder
Tools to identify and plot homoplasies on a phylogenetic tree
.DS_Store
.Rbuildignore
.gitignore
CITATION
DESCRIPTION
HomoplasyFinder-logo.png
LICENSE
NAMESPACE
R/homoplasyFinder.R
R/onLoad.R
README.md
homoplasyFinder.Rproj
inst/extdata/example.fasta
inst/extdata/example.png
inst/extdata/example.tree
inst/extdata/presenceAbsence_INDELs.csv
inst/java/HomoplasyFinder.jar
man/addInconsistentPositionAlignment.Rd
man/addInternalNodeLabels.Rd
man/addScaleBar.Rd
man/assignSiteAlleles.Rd
man/getInternalNodeCoordinates.Rd
man/getMaxCoordinates.Rd
man/getTipCoordinates.Rd
man/getTipSequences.Rd
man/plotAnnotatedTree.Rd
man/readAnnotatedTree.Rd
man/runHomoplasyFinderInJava.Rd
man/runHomoplasyFinderJarTool.Rd
