readAnnotatedTree: Read in the annotated Newick tree
In JosephCrispell/homoplasyFinder: Tools to identify and plot homoplasies on a phylogenetic tree
View source: R/homoplasyFinder.R
Description
This function runs reads in the annotated Newick formatted phylogenetic tree file produced by HomoplasyFinder. Node labels of tree report where changes occured for inconsistent positions ("-" separated)
Usage
1
readAnnotatedTree(path, date = format(Sys.Date(), "%d-%m-%y"))
Arguments
path
The full path to the directory where the output files were created (must match what was used for runHomoplasyFinderInJava())
date
Date runHomoplasyFinderInJava() was ran. Format: "%d-%m-%y". Defaults to today.
JosephCrispell/homoplasyFinder documentation built on June 7, 2021, 11 a.m.
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View source: R/homoplasyFinder.R
Description
This function runs reads in the annotated Newick formatted phylogenetic tree file produced by HomoplasyFinder. Node labels of tree report where changes occured for inconsistent positions ("-" separated)
Usage
1 | readAnnotatedTree(path, date = format(Sys.Date(), "%d-%m-%y"))
|
Arguments
path |
The full path to the directory where the output files were created (must match what was used for |
date |
Date |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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