Man pages for JosephCrispell/phyloHelpeR
Functions to help with plotting phylogenies in R
| addSNPScale | Add a SNP scale to phylogeny |
| calculateLocation | Get the X and Y coordinates of a string coded location on a... |
| getTipCoordinates | Get the relative and absolute coordinates of tips on a... |
| getTreeFileWithSupportValues | Retrieves the tree file with bootstrap values from RAxML... |
| plotLineBetweenPairOfTips | Plot lines between sets of coordinates in the plotting window |
| plotLinesBetweenAllTips | Plot lines between coordinates of tips on phylogenies |
| runRAXML | Run command line RAxML tool from within R with bootstrapping |
| tanglePlot | Plot the different nucleotides present in an alignment of... |
