plotLinesBetweenAllTips: Plot lines between coordinates of tips on phylogenies

In JosephCrispell/phyloHelpeR: Functions to help with plotting phylogenies in R

Description

Function used by tanglePlot()

Usage

plotLinesBetweenAllTips(
  tipLocationsA,
  tipLocationsB,
  col = "black",
  lwd = 1,
  lty = 1,
  onlyIfDifferent = TRUE,
  offsetProp = NULL
)

Arguments

tipLocationsA	a list of coordinates of tips on a phylogenetic tree plot
tipLocationsB	a list of coordinates of tips on a phylogenetic tree plot
col	colour of the lines connecting tips. Defaults to black
lwd	width of the lines connecting tips. Defaults to 1
lty	type of the lines connecting tips. Defaults to 1 (solid)
onlyIfDifferent	a boolean variable, if TRUE only plots lines between tips that are in different locations on the phylogenies, otherwise lines between all tips are plotted. Defaults to TRUE
offsetProp	offset value to displace starts of connecting lines from tips, set as the proportion of plotting window. Defaults to NULL (off)

JosephCrispell/phyloHelpeR documentation built on April 7, 2020, 8:28 a.m.