Description Usage Arguments Format Methods
A class to facilitate working with the level 4 data from the LINCS project. This class does not provide any of the data (which must be obtained under individual agreement with LINCS). However, once obtained, working with their large binary data files will is facilitated by this class.
1 2 |
dataFile |
path to the level for LINCS data file in hdf5 format (.gctx) |
infoFile |
path to the instance info data file for the LINCS data file in hdf5 format (.gctx). Note:
LINCS provides this data in a tab delimited format (inst.info). However that file is unwieldy to work with
in that format as it takes a long time to load and takes a considerable chunk of memory. It is much
more efficient to convert it to an hdf5 file with a structure parallel to that of the datafile. This class
provides a utility function |
LINCS
class generator
getProbes()
Returns a vector of HG U133 Plus 2.0 probesets for which data has been imputed from the 978 landmark genes measured directly on the luminex bead arrays by the LINCS
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