getClusteringInput-TrajectoryDataSet-method: get clustering input
In JuanXie19/TCRlineageClust:
Description
Usage
Arguments
Value
Examples
Description
This function prepare the input for the clustLineages function
Usage
1
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## S4 method for signature 'TrajectoryDataSet'
getClusteringInput(TrajectoryDataSet)
Arguments
object
A TrajectoryDataSet object, which contains a list of clonotype lineages
Value
A object of class ClusterInput with clonotype information as well as UMAP coordinates.
Examples
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TCR <-read.csv("/PATH/TO/YOUR/scTCR-seqData/",header=T)
load('Mice.sub.rda')
Combined <- getCombinedDataSet(TCR,Mice.sub)
Trajectory <- getClonotypeLineages(Combined,start.clus = NULL, end.clus = NULL, dist.method = 'simple', use.median = TRUE)
ClusterInput <-getClusteringInput(Trajectory)
JuanXie19/TCRlineageClust documentation built on Feb. 26, 2022, 12:33 a.m.
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Description Usage Arguments Value Examples
Description
This function prepare the input for the clustLineages function
Usage
1 2 | ## S4 method for signature 'TrajectoryDataSet'
getClusteringInput(TrajectoryDataSet)
|
Arguments
object |
A |
Value
A object of class ClusterInput with clonotype information as well as UMAP coordinates.
Examples
1 2 3 4 5 | TCR <-read.csv("/PATH/TO/YOUR/scTCR-seqData/",header=T)
load('Mice.sub.rda')
Combined <- getCombinedDataSet(TCR,Mice.sub)
Trajectory <- getClonotypeLineages(Combined,start.clus = NULL, end.clus = NULL, dist.method = 'simple', use.median = TRUE)
ClusterInput <-getClusteringInput(Trajectory)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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