MyDistriPlot: Distribution map generation of proteins

In JunQu-Lab/MAsP: R Shiny-based Application for Micro-scaffold Assisted Spatial Proteomics (MASP)

Distribution map generation of proteins

Description

Distribution map generation of proteins

Usage

MyDistriPlot(
  df,
  location,
  target_name,
  limit,
  scale = TRUE,
  upperL = 2,
  lowerL = -2,
  color1,
  color2,
  color3,
  transparent = FALSE,
  mask = FALSE,
  Legend = TRUE,
  g = g
)

Arguments

df	the quantitative protein result
location	the original location information
target_name	the protein in the map
limit	a logical value, if setting the value limits of protein abundance/ratio in the distribution map
scale	a logical value, if converting data to z-score
upperL	the upperbound of the protein abundance/ratio the map can show
lowerL	the lowerbound of the protein abundance/ratio the map can show
color1	the lower color, color name and HTML code are both acceptable
color2	the middle color, color name and HTML code are both acceptable
color3	the upper color, color name and HTML code are both acceptable
transparent	a logical value, if the map is with a transparent background while downloading
mask	a logical value, if adding a brain-shape cover on the map
Legend	a logical value, if showing the legend
g	the brain-shape cover

Value

a protein distribution map

JunQu-Lab/MAsP documentation built on Nov. 23, 2022, 1:51 a.m.