estimateGdRatio: Estimating the intensity ratios across channels within mass...
In JunweiLiu0208/GdClean: Method for removing Gadolinium contamination in CyTOF data

Estimating the intensity ratios across channels within mass range of Gd, the first 155 channel was selected as the reference channel.

1	estimateGdRatio(ff, PercentList)

`ff`	The flowframe object of Gd contaminated CyTOF data.
`PercentList`	The top-n percent of cells selected for estimating Gd ratios, sorted by mean expression of Gd channels.

The estimated intensity ratios across channels, the 155 channel was selected as the reference channel.

library(GdClean)

PercentList <- seq(5, 100, 5)
GdRatios <- estimateGdRatio(ff, percentList)

JunweiLiu0208/GdClean documentation built on Jan. 13, 2022, 8:32 p.m.

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