Man pages for JustinaXie/NDATA
Network Assisted Analysis for De novo mutations
| count.llk | Calculate the summation of logP(Y|theta1) |
| Get_Post_FDR | Calculate the FDR for all genes |
| Get_theta_0 | Estimate the value of theta_0 using MLE with ridge penalty |
| Get_theta_1_Gamma | Estimate for estimating data parameters theta_1 |
| Gibbs.post | Calculate the Gibbs posterior |
| Gibbs.trueParam | Functions for sampling S_i from prior distribution |
| icm_randsearch | Estimate the parameters iteratively |
| likpw | Calculate the density for each node given its label |
| MRF.condProb | Calculate the conditional probability: P(Si|S_Ni,theta_0) |
| pseudo.llk | Calculate the pseudo-likelihood |
