pseudo.llk: Calculate the pseudo-likelihood

In JustinaXie/NDATA: Network Assisted Analysis for De novo mutations

Calculate the pseudo-likelihood

Description

Calculate the pseudo-likelihood

Usage

pseudo.llk(nodesLabel, nodesNeighbor, w, W, theta_0, theta_1, Y, N, mu)

Arguments

nodesLabel	The vector of latent state of all genes.
nodesNeighbor	Neighbors of corresponding nodes in the network.
w	The parameter in the prior for network.
W	Another way to input the weight. For internal use.
theta_0	The value of theta_0.
theta_1	The value of theta_1.
Y	The vector of DNM counts for all genes.
N	The parameter in the prior for network.
mu	The vector of mutability for all genes.

Value

The pseudo-likelihood.

JustinaXie/NDATA documentation built on May 22, 2022, 11:44 a.m.