Files in KChen-lab/bindSC
Bi-order INtegration of Data from Single Cell multi-omics technologies \
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BiCCA.R
R/generics.R
README.md
data.Rcheck/00check.log
data/sim.rda
doc/images/A549.pdf
doc/images/bc.compress.gif
doc/images/bindSC_benchmarking.gif
doc/images/logo.png
doc/images/retina.compress.gif
doc/images/sim.pdf
inst/A549/liger.csv
inst/A549/seurat.csv
inst/CITE-seq/gene25.csv
inst/CITE-seq/rna.25gene.umap.csv
inst/CITE-seq/rna.25protein.umap.csv
inst/CITE-seq/rna.HVG3000.umap.csv
inst/CITE-seq/umap_plt.csv
inst/Sim/liger.csv
inst/Sim/seurat.csv
inst/Sim/sim.rds
man/BiCCA.Rd
man/L2Norm.Rd
man/bindSCPalettes.Rd
man/colScale.Rd
man/paletteContinuous.Rd
man/paletteDiscrete.Rd
man/rowScale.Rd
man/runLeiden.Rd
vignettes/.Rhistory
vignettes/.gitignore
vignettes/A549/.Rhistory
vignettes/A549/A549.Rmd
vignettes/A549/A549.html
vignettes/A549/A549.pdf
vignettes/A549/A549_files/figure-html/unnamed-chunk-3-1.png
vignettes/A549/A549_preprocess.ATAC.Rmd
vignettes/A549/A549_preprocess.RNA.Rmd
vignettes/A549/eval_plot.r
vignettes/A549/monocle_subfunc.r
vignettes/CITE-seq/.Rhistory
vignettes/CITE-seq/CITE_seq.Rmd
vignettes/CITE-seq/CITE_seq.html
vignettes/CITE-seq/SC_ST.Rmd
vignettes/CITE-seq/SC_ST.html
vignettes/CITE-seq/figPlot.R
vignettes/SC_ST/SC_ST.Rmd
vignettes/SC_ST/SC_ST.html
vignettes/method_eval/Eval.R
vignettes/method_eval/README.md
vignettes/method_eval/method_eval.A549.Rmd
vignettes/method_eval/method_eval.A549.html
vignettes/method_eval/method_eval.citeseq.Rmd
vignettes/method_eval/method_eval.citeseq.html
vignettes/method_eval/method_eval.retina.Rmd
vignettes/method_eval/method_eval.retina.html
vignettes/method_eval/method_eval.sim.html
vignettes/method_eval/runMethod.R
vignettes/method_eval/simulation-manifold/sim3_0.2-mmdma.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.2-mmdma.html
vignettes/method_eval/simulation-manifold/sim4_0.2-mmdma.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.2-pamona.html
vignettes/method_eval/simulation-manifold/sim4_0.2-pamona.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.2-scot.html
vignettes/method_eval/simulation-manifold/sim4_0.2-scot.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.2-unioncom.html
vignettes/method_eval/simulation-manifold/sim4_0.2-unioncom.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.5-mmdma.html
vignettes/method_eval/simulation-manifold/sim4_0.5-mmdma.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.5-pamona.html
vignettes/method_eval/simulation-manifold/sim4_0.5-pamona.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.5-scot.html
vignettes/method_eval/simulation-manifold/sim4_0.5-scot.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.5-unioncom.html
vignettes/method_eval/simulation-manifold/sim4_0.5-unioncom.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.7-mmdma.html
vignettes/method_eval/simulation-manifold/sim4_0.7-mmdma.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.7-pamona.html
vignettes/method_eval/simulation-manifold/sim4_0.7-pamona.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.7-scot.html
vignettes/method_eval/simulation-manifold/sim4_0.7-scot.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.7-unioncom.html
vignettes/method_eval/simulation-manifold/sim4_0.7-unioncom.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.9-mmdma.html
vignettes/method_eval/simulation-manifold/sim4_0.9-mmdma.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.9-pamona.html
vignettes/method_eval/simulation-manifold/sim4_0.9-pamona.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.9-scot.html
vignettes/method_eval/simulation-manifold/sim4_0.9-scot.ipynb
vignettes/method_eval/simulation-manifold/sim4_0.9-unioncom.html
vignettes/method_eval/simulation-manifold/sim4_0.9-unioncom.ipynb
vignettes/mouse_retina/retina.Rmd
vignettes/mouse_retina/retina.html
vignettes/sim/.Rhistory
vignettes/sim/sim.R
vignettes/sim/sim.Rmd
vignettes/sim/sim.html
vignettes/sim/test.rds
vignettes/sim/tp/iteration1.rds
vignettes/sim/tp/iteration2.rds
vignettes/sim/tp/iteration3.rds
vignettes/sim/tp/iteration4.rds
vignettes/sim/tp/iteration5.rds
vignettes/sim/tp/iteration6.rds
vignettes/sim/tp/out_final.rds
