NEWS.md

In KGodard1/Fastball-SourceCpp: Extracts the Backbone from Weighted Graphs

title: "NEWS" output: html_document

backbone 1.5.0

• add four functions to generate random bipartite graphs: bipartite.from.probability(), bipartite.from.sequence(), bipartite.from.distribution(), and bipartite.add.blocks()
• set diagonal in positive and negative backbone object matrices to NA
• corrected p-value computation in fixedfill()
• remove running time from backbone object summary dataframe
• update documentation, readme, vignette

backbone 1.4.0

• add fixedcol() function - null model where column degrees are fixed and row sums are allowed to vary
• add fixedfill() function - null model where the number of 1's in the matrix (number of edges in the graph) are fixed
• replace class.convert() with tomatrix() and frommatrix()
• use updated Poisson binomial calculations (more accurate approximation)
• hyperg() now called fixedrow()
• remove bipartite.null function
• update documentation, readme, vignette
• include logo

backbone 1.3.1

• speedups to sdsm

backbone 1.3.0

• update sdsm to use the bicm model - a new, fast, approximation of the probabilities
• remove all other models from sdsm
• if an older model is called in sdsm, show warning that model has changed
• add new function bipartite.null which lets the user pick if they want rows/cols to be fixed or vary
• update fwer m parameter

backbone 1.2.2

• fix fdsm to accept all graph inputs
• rename sdsm "chi2" model to "rcn"
• universal function can now return weighted projection
• universal function now has a narrative parameter
• class.convert now drops (with warning) rows and columns with zero sum before sending output to universal, sdsm, fdsm, or hyperg.
• update citations

backbone 1.2.1

• add narrative parameter to backbone.extract for suggested manuscript text
• add scobit model to sdsm
• add time unit to runtime calculation
• minor spelling and comment fixes

backbone 1.2.0

• add support for sparse matrix, igraph, network, and edgelist objects (see 'class.convert')
• add family-wise error rate test corrections (see 'backbone.extract')
• sdsm: add multiple methods for computing initial probabilities (see 'sdsm' details) one of which uses convex optimization (see 'polytope')
• sdsm: update poisson binomial computation method to increase speed (see 'sdsm' and 'rna')
• add more descriptives to summary dataframe output of backbone object
• update documentation of functions
• update vignette to reflect package changes
• bug fixes for R 4.0.0

backbone 1.1.0

• add support for sparse matrices
• add support for speedglm in sdsm
• add poisson binomial approx. in sdsm
• add summary output to sdsm, fdsm, hyperg, universal
• update vignette to reflect package changes
• bug fixes

backbone 1.0.0

• initial release

KGodard1/Fastball-SourceCpp documentation built on Dec. 18, 2021, 2:35 a.m.