ath_featureLength: Example - vector with gene length
In KarenGoncalves/CustomSelection: Custom selected reference genes outperform pre-defined reference genes in transcriptomic analysis
ath_featureLength R Documentation
Example - vector with gene length
Description
Length of Arabidopsis thaliana genes (TAIR10) obtained with the following code:
Usage
ath_featureLength
Format
Name vector: length (values) of genes (names) of Arabidopsis thaliana
Details
library(biomaRt)
ath <- useMart('plants_mart', host = "plants.ensembl.org", dataset = "athaliana_eg_gene")
gene_start_end = getBM(attributes = c('ensembl_gene_id', 'start_position', 'end_position'), mart = ath)
featureLength <- gene_start_end$end_position - gene_start_end$start_position
names(featureLength) <- gene_start_end$ensembl_gene_id
Source
KarenGoncalves/CustomSelection documentation built on Oct. 24, 2023, 12:39 a.m.
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| ath_featureLength | R Documentation |
Example - vector with gene length
Description
Length of Arabidopsis thaliana genes (TAIR10) obtained with the following code:
Usage
ath_featureLength
Format
Name vector: length (values) of genes (names) of Arabidopsis thaliana
Details
library(biomaRt)
ath <- useMart('plants_mart', host = "plants.ensembl.org", dataset = "athaliana_eg_gene")
gene_start_end = getBM(attributes = c('ensembl_gene_id', 'start_position', 'end_position'), mart = ath)
featureLength <- gene_start_end$end_position - gene_start_end$start_position
names(featureLength) <- gene_start_end$ensembl_gene_id
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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