plot.Tendril | R Documentation |
Function to plot Tendril results
## S3 method for class 'Tendril' plot(x, term = NULL, coloring = "Terms", interactive = FALSE, ...)
x |
An object of class tendril, as made by Tendril() |
term |
The term to extract. |
coloring |
Name of column used for coloring tendrils (only basic plots). Available coloring choices are: "Terms" - One tendril one color; "p" - Prop.test; "p.adj" - P-values adjusted using the False discovery rate method within each tendril; "fish" - Fisher.test; "rdiff" - Risk difference; "RR" - Risk Ratio; "OR" - Odds Ratio; "FDR.tot" - P-values adjusted using the False discovery rate method for all tendrils; and "TermsCount" - Total number of events for that specific type of event |
interactive |
Specifies if the plot must be interactive or not. If interactive == TRUE, plotly will be used to render the plot. Otherwise, (default) the plot will be rendered as a static image using ggplot2. |
... |
unused |
If saving the results of the function to a variable, this will be of class tendril and will contain the data passed to the plot function and the plot itself
# generate data using Tendril() data <- Tendril(mydata = TendrilData, rotations = Rotations, AEfreqThreshold = 9, Tag = "Comment", Treatments = c("placebo", "active"), Unique.Subject.Identifier = "subjid", Terms = "ae", Treat = "treatment", StartDay = "day", SubjList = SubjList, SubjList.subject = "subjid", SubjList.treatment = "treatment" ) #Do plot res <- plot(data, coloring = "Terms") res <- plot(data, coloring = "p.adj") #To re-do the plot after the first call: print(res)
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