joinQuadNotes: joinQuadNotes: compiles quadrat and species-level notes from...

View source: R/joinQuadNotes.R

joinQuadNotesR Documentation

joinQuadNotes: compiles quadrat and species-level notes from Quadrat Data and Species tabs.

Description

This function combines qudrat-level notes from Quadrat Data, Quadrat Species, and Quadrat Seedling tabs and species level notes in the Quadrat Species and Seedlings Tabs.

Usage

joinQuadNotes(
  park = "all",
  from = 2007,
  to = as.numeric(format(Sys.Date(), "%Y")),
  QAQC = FALSE,
  panels = 1:4,
  locType = c("VS", "all"),
  eventType = c("complete", "all"),
  ...
)

Arguments

park

Combine data from all parks or one or more parks at a time. Valid inputs:

"all"

Includes all parks in the network

"APCO"

Appomattox Court House NHP only

"ASIS"

Assateague Island National Seashore

"BOWA"

Booker T. Washington NM only

"COLO"

Colonial NHP only

"FRSP"

Fredericksburg & Spotsylvania NMP only

"GETT"

Gettysburg NMP only

"GEWA"

George Washington Birthplace NM only

"HOFU"

Hopewell Furnace NHS only

"PETE"

Petersburg NBP only

"RICH"

Richmond NB only

"SAHI"

Sagamore Hill NHS only

"THST"

Thomas Stone NHS only

"VAFO"

Valley Forge NHP only

from

Year to start analysis, ranging from 2007 to current year

to

Year to stop analysis, ranging from 2007 to current year

QAQC

Allows you to remove or include QAQC events.

FALSE

Default. Only returns visits that are not QAQC visits

TRUE

Returns all visits, including QAQC visits

panels

Allows you to select individual panels from 1 to 4. Default is all 4 panels (1:4). If more than one panel is selected, specify by c(1, 3), for example.

locType

Allows you to only include plots that are part of the GRTS sample design or include all plots, such as deer exclosures.

"VS"

Only include plots that are part of the Vital Signs GRTS sample design

"all"

Include all plots, such as plots in deer exclosures or test plots.

eventType

Allows you to include only complete sampling events or all sampling events

"complete"

Default. Only include sampling events for a plot that are complete.

"all

Include all plot events with a record in tblCOMN.Event, including plots missing most of the data associated with that event (eg ACAD-029.2010). This feature is currently hard-coded in the function.

...

Other arguments passed to function.

Value

Returns a dataframe with all quadrat-related notes. Only returns visits with notes. The Note_Info column is either the quadrat or the species the note was recorded for. The Sample_Info column is either the sample qualifier for the quadrat, where SS = successfully sampled, NS = not sampled, NP = no species present, NC = not collected by protocol, and PM = permanently missing. If the Sample_Info column has "Collected" listed it means the species with the note was also collected.

Examples

## Not run: 
importData()
# compile quadrat data for invasive species in THST for 2019
THST_quads <- joinQuadNotes(park = 'THST', from = 2019, to = 2019)

## End(Not run)


KateMMiller/forestMIDN documentation built on Nov. 10, 2024, 11:54 p.m.