calc_oxy: Calculate Pmax, functional PSII content, and cyt f content

Description Usage Arguments Value

Description

. This function calculates three key parameters.

Usage

1
2
calc_oxy(calb, positive_pmax, negative_pmax, positive_psii, negative_psii,
  amp_pmax = 5, amp_psii = 20, leaf_area, hz = 10, e_per_o2 = 4)

Arguments

calb

signal amplitude corresponding to 1 mL O2 which was injected for the calibration, unit: grid.

positive_pmax

a slope corresponding to net O2 evolution rate under repeatitive single-turnover flashes and weak far-red light, unit: grid min^-1.

negative_pmax

a slope corresponding to O2 uptake rate under weak far-red light, unit: grid min^-1.

positive_psii

a slope corresponding to net O2 evolution rate under repeatitive single-turnover flashes and weak far-red light, unit: grid min^-1.

negative_psii

a slope corresponding to O2 uptake rate under weak far-red light, unit: grid min^-1.

amp_pmax

an expansion coefficient, no-unit.

amp_psii

an expansion coefficient, no-unit.

leaf_area

an area of the enclosed leaf in the chamber, unit: m^2.

hz

a frequency of single-turnover flash, unit: s-1, default: 10.

e_per_o2

a number of electron consumed in PSII to evolve one O2, unit: mol mol^-1, default: 4.

artefact

a factor to correct non-photosynthetic signal, i.e. heating by irradiance, unit: grid min^-1.

Value

a lst


KeachMurakami/kagari documentation built on May 29, 2019, 2:26 p.m.